PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00011.1.g04750.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 529aa    MW: 58304.7 Da    PI: 8.922
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00011.1.g04750.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.4e-08222258947
                                   HHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   9 dellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   de+++ a+ ++G + Wk+I + +  ++t+ q++s+ qky
  Zjn_sc00011.1.g04750.1.am.mk 222 DEQIAVAFFRFGRD-WKKIEEQVR-TKTAVQIRSHAQKY 258
                                   89999999****77.*********.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-5185265IPR009057Homeodomain-like
CDDcd001678.42E-4218259No hitNo description
SuperFamilySSF466891.2E-7220264IPR009057Homeodomain-like
PfamPF002498.8E-7222258IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MWRTGRPRTE TCACCVTSSF EAVARVVLPK LPVCPNSQTT RPVRIRTQPG THALLSPREP  60
ADFPEPERTV AISFFPHMFF SRLTDDTSLS DATRSQSHHH QPVGWRAQAT SYDAATRLRP  120
APHLHFNSWL NCRRSIRVRV ACYISASVLG EDGICTSATR LTMDGGGSNH ETPGGKKARK  180
PYTITKPRER WSTEEHGRFL DALLIQDLSR IEIRFGGSVE RDEQIAVAFF RFGRDWKKIE  240
EQVRTKTAVQ IRSHAQKYFI KVQKLGLAAG LPPQYPRRRF VMHQQQQQGS TSTAGSSAAA  300
VPVLQGQPHG APVAVPMPGP SCDGVVVHGS LGWDCAGILP STAGGKHLCS ATVYFLINAP  360
GTSAWVNTDG HGQIAPPASL IGAPSFSDAT VDWAGSSSSE PLASGDAQDE FIQLPLSPDD  420
LNFARVYRFV GDMFDPNTVC QVDSHLQRLK GMDDITVKTV STRSNRFTTF FRPPDIRMDD  480
EAPRMAEFRN AQGPVRCTLH QNTYVHDHHN TDAPAQAWLA SGRMQTSSR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012701662.16e-89PREDICTED: protein REVEILLE 4-like isoform X1
TrEMBLI1NKD34e-86I1NKD3_ORYGL; Uncharacterized protein
STRINGORGLA01G0032300.11e-85(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36423170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-30MYB_related family protein